New Genomes In this release, PATRIC has added 9,136 new genomes, bringing the total number of genomes in PATRIC to over 89,000. Total 174 genomes, which were of low quality or obsolete, were deleted from PATRIC. In addition, names of 1,633 genomes were revised to include strain names to make them more informative. The full […]
PATRIC has added several new services and data resources in the July 2017 Release: Phylogenetic Tree Builder constructs custom phylogenetic trees using conserved protein sequences. Tn-Seq Analysis aligns reads and measures essentiality of Tn-seq data using the TRANSIT software. Similar Genome Finder finds the closest related genomes to selected genome or FASTA file using MInHash. Compare Region Viewer displays […]
PATRIC November Release features over 9000 New Genomes, Host Genomes and Annotations, Essential Gene Predictions, Command Line Interface, RNA-Seq Service Enhancements and Other Updates.
PATRIC will be hosting a 1/2-day workshop entitled “Assemble, Annotate and Analyze Your Own Genome using PATRIC, the All Bacterial Bioinformatics Resource Center,” at the Great Lakes Bioinformatics (GLBIO) Conference at the University of Illinois at Chicago on May 17, 2017 in Chicago, Illinois. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly […]
The PATRIC/RAST teams will be offering a tutorial on December 12-14, 2016 at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]
PATRIC September Release features over 4500 New Genomes, Literature Feferences, and Assembly Service Enhancements
New Genomes In this release, we have added 4653 new genomes, including replacement of 3200 Streptococcus genomes which had issues with the sequence data. This update brings the total number of genomes in PATRIC to over 79,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from […]
The next PATRIC/RAST workshop will be held Wednesday, November 9, 2016 – Friday, November 11, 2016 at Argonne National Laboratory. We will post further details once they become available.
PATRIC July 2016 Release Features Over 7600 New Genomes and AMR Panel Data for Approximately 5400 Genomes. PATRIC Also Releases Alpha Version of New Website Design.
New genomes: In this release, we have added 7,683 new genomes, bringing the total number of genomes in PATRIC to over 77,000. 5,483 of the new genomes are from published AMR studies and were assembled from the reads available in NCBI SRA database. The remaining 2200 genomes were added from NCBI GenBank. The full list […]
PATRIC May 2016 Release Features Over 700 New Genomes and AMR Panel Data for Approximately 1800 Genomes
In this release, we have added 748 new genomes from NCBI GenBank, bringing the total number of genomes in PATRIC to over 70,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. This release includes a special genome, corresponding to […]
The assembled genome of Colistin-resistant E. coli MRSN 388634 is now available in PATRIC here. Sequence reads for MRSN388634 have been deposited in the NCBI Short Read Archive by researchers at the Walter Reed Army Institute of Research and Walter Reed National Military Medical Center under Accession number SRP075674. The authors report the presence of […]
The PATRIC/RAST teams will be offering a tutorial on July 26-28, 2016 at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]
Dates: July 26 – 28, 2016 Location: Argonne National Laboratory, Argonne, IL Agenda: Tuesday, July 26 9am PATRIC Introduction and registration 10am Genome Assembly 11am Genome Annotation and exploration 12pm Lunch 1pm SNP pipeline 2pm Proteome Comparison 3pm Questions and adjournment Wednesday, July 27 9am Comparative Genomics 12pm Lunch 1pm RNA-Seq 2pm Upload […]