The PATRIC/RAST workshop being offered on 2017 August 14-16 is now FULL. We thank all those who have enquired for their kind interest in PATRIC and RAST. We will post information regarding the date and location of the next workshop as soon as it scheduled. The PATRIC/RAST teams will be offering a tutorial on 2017-August […]
PATRIC May 2017 Release brings total genomes to over 100,000 and includes 21 host response data sets
New Genomes In this release, PATRIC has added over 7,700 new genomes, bringing the total number of public genomes in PATRIC to 103,779 bacterial, 1,078 archeal, and 10 eukaryotic host. This is a notable milestone for the project, especially considering that the database contained only 400 bacterial genomes at the end of 2009, when PATRIC […]
PATRIC will be hosting a 1-day workshop entitled “The PATRIC Bioinformatics Resource Center for ‘Omics Data Analysis,” at the 18th International Conference on Systems Biology (ICSB 2017) on August 6, 2017 on the Virginia Tech University campus in Blacksburg, VA. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly and annotation, RNA-Seq analysis, […]
PATRIC March 2017 Release Features over 3600 New Genomes, and New Functionality and Data Including an Antibiotics Database, AMR Phenotype Information, a Close Genome Finder Service, HPI/PPI Data and Visualization, a Compare Region Viewer, an ID-Mapping Tool, and Enhanced Global Search.
PATRIC March 2017 Data and Website Release: New Genomes In this release, PATRIC has added 3669 new genomes, bringing the total number of genomes in PATRIC to nearly 98,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. UniProt ID […]
PATRIC will be hosting a 1/2-day workshop entitled “Assemble, Annotate and Analyze Your Own Genome using PATRIC, the All Bacterial Bioinformatics Resource Center,” at the Great Lakes Bioinformatics (GLBIO) Conference at the University of Illinois at Chicago on May 17, 2017 in Chicago, Illinois. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly […]
New Genomes In this release, PATRIC has added 5938 new genomes, bringing the total number of public genomes in PATRIC to over 94945. Total 571 of the new genomes were collected from published antimicrobial resistance studies, assembled from the reads available in SRA using PATRIC Assembly Service and then annotated using PATRIC Annotation Service. The […]
PATRIC November Release features over 9000 New Genomes, Host Genomes and Annotations, Essential Gene Predictions, Command Line Interface, RNA-Seq Service Enhancements and Other Updates.
New Genomes In this release, PATRIC has added 9,136 new genomes, bringing the total number of genomes in PATRIC to over 89,000. Total 174 genomes, which were of low quality or obsolete, were deleted from PATRIC. In addition, names of 1,633 genomes were revised to include strain names to make them more informative. The full […]
The PATRIC/RAST teams will be offering a tutorial on December 12-14, 2016 at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]
PATRIC September Release features over 4500 New Genomes, Literature Feferences, and Assembly Service Enhancements
New Genomes In this release, we have added 4653 new genomes, including replacement of 3200 Streptococcus genomes which had issues with the sequence data. This update brings the total number of genomes in PATRIC to over 79,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from […]