The PATRIC November 2017 Release Features over 20,000 new genomes, as well as new functionality and data Including a production release of the Command Line Interface (CLI), FTP-based bulk upload capability, enhancements to the Phylogenetic Tree Building Service, updated Tutorials, and other enhancements. Data Updates: New Genomes In this release, PATRIC has added over 20,000 […]
PATRIC now provides a new service that builds phylogenetic trees. The trees, which can include both private and public data, are built using well-established methods for generating whole-genome phylogenies from amino acid sequences. On November 30th at 3pm EST we will provide a webinar demonstrates this service. Please email firstname.lastname@example.org if you plan to attend […]
The PATRIC/RAST teams will be offering a tutorial workshop on 2017-November 14-16, at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days, with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]
PATRIC July 2017 Release Features over 3900 New Genomes, and New Functionality and Data Including a New Phylogenetic Tree Building Service and Enhancements to Multiple Services and Tools.
PATRIC July 2017 Data and Website Release: Data Updates: New Genomes In this release, PATRIC has added 3902 new genomes and associated metadata, bringing the total number of genomes in PATRIC to over 108,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing […]
The PATRIC/RAST workshop being offered on 2017 August 14-16 is now FULL. We thank all those who have enquired for their kind interest in PATRIC and RAST. We will post information regarding the date and location of the next workshop as soon as it scheduled. The PATRIC/RAST teams will be offering a tutorial on 2017-August […]
PATRIC May 2017 Release brings total genomes to over 100,000 and includes 21 host response data sets
New Genomes In this release, PATRIC has added over 7,700 new genomes, bringing the total number of public genomes in PATRIC to 103,779 bacterial, 1,078 archeal, and 10 eukaryotic host. This is a notable milestone for the project, especially considering that the database contained only 400 bacterial genomes at the end of 2009, when PATRIC […]
PATRIC will be hosting a 1-day workshop entitled “The PATRIC Bioinformatics Resource Center for ‘Omics Data Analysis,” at the 18th International Conference on Systems Biology (ICSB 2017) on August 6, 2017 on the Virginia Tech University campus in Blacksburg, VA. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly and annotation, RNA-Seq analysis, […]
PATRIC March 2017 Release Features over 3600 New Genomes, and New Functionality and Data Including an Antibiotics Database, AMR Phenotype Information, a Close Genome Finder Service, HPI/PPI Data and Visualization, a Compare Region Viewer, an ID-Mapping Tool, and Enhanced Global Search.
PATRIC March 2017 Data and Website Release: New Genomes In this release, PATRIC has added 3669 new genomes, bringing the total number of genomes in PATRIC to nearly 98,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. UniProt ID […]
PATRIC will be hosting a 1/2-day workshop entitled “Assemble, Annotate and Analyze Your Own Genome using PATRIC, the All Bacterial Bioinformatics Resource Center,” at the Great Lakes Bioinformatics (GLBIO) Conference at the University of Illinois at Chicago on May 17, 2017 in Chicago, Illinois. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly […]
New Genomes In this release, PATRIC has added 5938 new genomes, bringing the total number of public genomes in PATRIC to over 94945. Total 571 of the new genomes were collected from published antimicrobial resistance studies, assembled from the reads available in SRA using PATRIC Assembly Service and then annotated using PATRIC Annotation Service. The […]