In this release, we have added 2466 new genomes from NCBI GenBank, bringing the total number of genomes in PATRIC to over 57,000. This release utilizes our newly deployed continuous release process wherein we can release genomes into the database in near real-time from acquisition from GenBank and other sources. The full list of available […]
Data Releases & Updates
New Genomes and Annotation System Enhancements In this release, we have added 23,052 new genomes from NCBI GenBank, bringing the total number of genomes in PATRIC to over 54,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. As part […]
AMR Metadata In this release, we have added additional antimicrobial resistance phenotype related metadata for 949 genomes. The AMR panel data was primarily provided by the NIAID Genomic Centers for Infectious Diseases, which was incorporated into PATRIC after a comprehensive manual curation process. Below is the summary of the top bacterial genera with AMR metadata. […]
PATRIC June 2015 Release Features Integrated Comparative Analysis Capabilities with User-Supplied Genomes and New Services for Protein-Based Genome Comparison, RNA-Seq Analysis, and Metabolic Modeling
The June Release delivers the second stage of genome assembly, annotation and integrated analysis in PATRIC. It also includes a new Proteome Comparison Service, RNA-Seq Analysis Service, and Metabolic Modeling Service, plus updates to the Private Workspace and other enhancements. NOTE: You must have a PATRIC user account and be logged-in to use the services […]
PATRIC March 2015 Release Features Genome Assembly and Annotation Services and over 6,000 New Genomes
This March Release begins the first stage of integration of new and updated analysis services in PATRIC, including addition of a new Genome Assembly Service, Genome Annotation Service, Differential Expression Service and enhanced Workspace to facilitate use of these services. NOTE: You must have a PATRIC user account and be logged in to use the […]
PATRIC December 2014 Release Features Additional Support and Data for Antimicrobial Resistance and over 5,000 New Genomes, Including Archaea
This December Release sets the stage for new functionality and data in PATRIC. In 2015, our primary goals are as follows: Revamp PATRIC infrastructure to support the hundreds of thousands of prokaryotic genomes that will become available over the next five years, providing real-time integration and release of data. Support end-to-end analysis of prokaryotic genomes […]
Additional Special Data Sets In addition to incorporating large data sets from public repositories, PATRIC features Special Collections data pages that highlight data sets that were generated for users to use together to study a problem. Many of the collections have been generated by NIAID-funded projects to provide baseline data for further use by researchers. […]
PATRIC July 2014 Release Features New Circular Genome Viewer, Group Explorer, Integration of Protein-Protein Interaction Data, and New Genomic and Transcriptomic Data
Over 6,000 new genomes, including over 1,500 Mycobacterium tuberculosis genomes from TB-ARC.
Including Antibiotic Resistance Genes, Drug Targets, Human Homologs, and Virulence Factors.
Allow for quick access to various data types and specific data collections.