Data Releases & Updates

PATRIC March 2017 Release Features over 3600 New Genomes, and New Functionality and Data Including an Antibiotics Database, AMR Phenotype Information, a Close Genome Finder Service, HPI/PPI Data and Visualization, a Compare Region Viewer, an ID-Mapping Tool, and Enhanced Global Search.

PATRIC March 2017 Data and Website Release:  New Genomes In this release, PATRIC has added 3669 new genomes, bringing the total number of genomes in PATRIC to nearly 98,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. UniProt ID […]

PATRIC January 2017 Release features 5938 new genomes and new AMR phenotype data

New Genomes In this release, PATRIC has added 5938 new genomes, bringing the total number of public genomes in PATRIC to over 94945. Total 571 of the new genomes were collected from published antimicrobial resistance studies, assembled from the reads available in SRA using PATRIC Assembly Service and then annotated using PATRIC Annotation Service.  The […]

PATRIC November Release features over 9000 New Genomes, Host Genomes and Annotations, Essential Gene Predictions, Command Line Interface, RNA-Seq Service Enhancements and Other Updates.

New Genomes In this release, PATRIC has added 9,136 new genomes, bringing the total number of genomes in PATRIC to over 89,000. Total 174 genomes, which were of low quality or obsolete, were deleted from PATRIC. In addition, names of 1,633 genomes were revised to include strain names to make them more informative. The full […]

PATRIC September Release features over 4500 New Genomes, Literature Feferences, and Assembly Service Enhancements

New Genomes In this release, we have added 4653 new genomes, including replacement of 3200 Streptococcus genomes which had issues with the sequence data. This update brings the total number of genomes in PATRIC to over 79,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from […]

PATRIC July 2016 Release Features Over 7600 New Genomes and AMR Panel Data for Approximately 5400 Genomes. PATRIC Also Releases Alpha Version of New Website Design.

New genomes: In this release, we have added 7,683 new genomes, bringing the total number of genomes in PATRIC to over 77,000. 5,483 of the new genomes are from published AMR studies and were assembled from the reads available in NCBI SRA database. The remaining 2200 genomes were added from NCBI GenBank.  The full list […]

PATRIC May 2016 Release Features Over 700 New Genomes and AMR Panel Data for Approximately 1800 Genomes

In this release, we have added 748 new genomes from NCBI GenBank, bringing the total number of genomes in PATRIC to over 70,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. This release includes a special genome, corresponding to […]

PATRIC March 2016 Release Features a New Variation Analysis Service, Service Enhancements, New AMR and other Data, and over 9000 New Genomes

NOTE: You must have a PATRIC user account and be logged in to use the services and workspace. Variation Analysis Service The new Variation Service can be used to identify and annotate sequence variations. The service enables users to upload one or multiple short read samples and compare them to a closely related reference genome. […]

PATRIC January 2016 Release Features Over 2400 New Genomes

In this release, we have added 2466 new genomes from NCBI GenBank, bringing the total number of genomes in PATRIC to over 57,000. This release utilizes our newly deployed continuous release process wherein we can release genomes into the database in near real-time from acquisition from GenBank and other sources.  The full list of available […]

PATRIC December 2015 Release Features over 20,000 New Genomes and PacBio Assembly Support

New Genomes and Annotation System Enhancements In this release, we have added 23,052 new genomes from NCBI GenBank, bringing the total number of genomes in PATRIC to over 54,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. As part […]

PATRIC September 2015 Data and Website Release

AMR Metadata In this release, we have added additional antimicrobial resistance phenotype related metadata for 949 genomes. The AMR panel data was primarily provided by the NIAID Genomic Centers for Infectious Diseases, which was incorporated into PATRIC after a comprehensive manual curation process. Below is the summary of the top bacterial genera with AMR metadata. […]