PATRIC Workshop at ICSB 2017 at Virginia Tech, August 6, 2017

PATRIC will be hosting a 1-day workshop entitled “The PATRIC Bioinformatics Resource Center for ‘Omics Data Analysis,” at the 18th International Conference on Systems Biology (ICSB 2017) on August 6, 2017 on the Virginia Tech University campus in Blacksburg, VA. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly and annotation, RNA-Seq analysis, variation analysis, and tools for comparative genomic analysis.  PATRIC provides researchers with the ability to analyze their private data directly with any of the available public data.

The registration page for ICSB is http://www.cpe.vt.edu/icsb2017/registration.html, and registration is open until August 3, 2017.

Participants must bring their own laptops.   The following system requirements are recommended for optimal PATRIC tool access and performance: Chrome, Safari, or Firefox browser, and Adobe Flash Player.

Draft Program

8:15-8:45  Registering and navigating through PATRIC

8:45-9:45  Genome assembly in PATRIC

9:45-10:00  Break

10:00-11:00  Genome annotation using RASTtk in PATRIC

11:00-12:00  Comparative genomics using PATRIC, Proteome Comparison

12:00-1:00  Lunch

1:00-2:30  Comparative genomics using PATRIC, Protein Family and Pathways

2:30-2:45  Break

2:45-3:15  Uploading and analyzing RNA-Seq and other ‘omic in PATRIC

3:15-4:00  SNP, MNP and indel analysis using PATRIC’s variation service

4:00-4:15  Summary and Questions