PATRIC January 2017 Release features 5938 new genomes and new AMR phenotype data

New Genomes

In this release, PATRIC has added 5938 new genomes, bringing the total number of public genomes in PATRIC to over 94945. Total 571 of the new genomes were collected from published antimicrobial resistance studies, assembled from the reads available in SRA using PATRIC Assembly Service and then annotated using PATRIC Annotation Service.  The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria.

New AMR Phenotype Data

In this release, we have incorporated curated AMR phenotype data for 1342 new genomes. The AMR panel data was collected from published AMR studies listed below.

Organism Source Genomes Antibiotics PMID
Acinetobacter baumannii GenBank 26 19 Holt et al.
Acinetobacter baumannii GenBank 35 11 25487793
Acinetobacter baumannii GenBank 21 7 24277043
Acinetobacter baumannii GenBank 268 1 27458211
Enterococcus faecium SRA 132 1 27713836
Klebsiella pneumoniae GenBank 16 14 26135860
Mycobacterium tuberculosis SRA 138 1 25960343
Mycobacterium tuberculosis SRA 123 4 27005572
Salmonella Typhimurium GenBank 341 15 24030491