PATRIC Workshop – San Diego State University

by patricwpadmin


Monday, July 20, 2015

9:30am            Register for PATRIC Account

10:00am          Overview of PATRIC ( – Tom Brettin

10:30am          Assemble a Genome in PATRIC Bob Olson

11:00am          Break

11:15am          Annotate a Genome in PATRIC Using RASTtk – Bob Olson

12:00pm          Lunch

1:00pm            Metabolic Modeling in PATRIC – Jim Davis

2:00pm            Proteomic Comparison – Jim Davis

3:45pm            Adjourn


Tuesday, June 21, 2015

9:30am            RNA-Seq Pipeline – Tom Brettin

10:30am          PATRIC and differential expression – Maulik Shukla

11:15am          Exploring Genes Identified by RNA-Seq and transcriptomic analysis – Maulik Shukla

12:00pm          Lunch

1:00pm            Comparative Genomics: Protein Families and Pathways – Maulik Shukla

3:00 pm           Day 2: Adjourn