PATRIC in Published Research

Featured Article: High-Throughput Sequencing, a Versatile Weapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology.

PATRIC Publications

Includes doi, PMID, and PMCID links.

PATRIC Wants to Hear From You!

The PATRIC team is committed to supporting and growing the bacterial research communities. To help us identify your specific needs, please take a moment to fill out our short PATRIC survey. Your participation is voluntary, and greatly appreciated.

PATRIC December 2014 Release Features Additional Support and Data for Antimicrobial Resistance and over 5,000 New Genomes, Including Archaea

This December Release sets the stage for new functionality and data in PATRIC. In 2015, our primary goals are as follows: Revamp PATRIC infrastructure to support the hundreds of thousands of prokaryotic genomes that will become available over the next five years, providing real-time integration and release of data. Support end-to-end analysis of prokaryotic genomes […]

PATRIC October 2014 Release Features New Special Data Sets and Updated Project Information

Additional Special Data Sets In addition to incorporating large data sets from public repositories, PATRIC features Special Collections data pages that highlight data sets that were generated for users to use together to study a problem. Many of the collections have been generated by NIAID-funded projects to provide baseline data for further use by researchers. […]

PATRIC Team Delivers Workshop at the ISCB-Latin America X-Meeting

A full-day PATRIC training session hosted by the ISCB-Latin America X-Meeting with BSB and SoiBio in Belo Horizonte, Brazil.

Comparative Genomic Analysis at PATRIC, A Bioinformatic Resource Center. Book chapter in Host Bacterial Infections, Methods in Molecular Microbiology.

Click to view Abstract and link to book.

Dr. Bruno Sobral Gives Presentation at the ILSI IAFP 2014 Conference in Indianapolis, Indiana on August 4, 2014.

The presentation, entitled, “Bioinformatic analysis of whole genome sequencing data and its application in the food industry,” featured current and future capabilities of the PATRIC system for assembly, annotation, and analysis of bacterial genomes. IAFP 2014

Dr. Rebecca Wattam Presents “Microbiology in the Post-Genome Era” as part of a Research Experience for Undergrads

Click here to view presentation.

PATRIC July 2014 Release Features New Circular Genome Viewer, Group Explorer, Integration of Protein-Protein Interaction Data, and New Genomic and Transcriptomic Data

Over 6,000 new genomes, including over 1,500 Mycobacterium tuberculosis genomes from TB-ARC.

Standardized metadata for human pathogen/vector genomic sequences

Click to view Abstract and link to full text.

PATRIC Team Delivers Workshop at the Computation Institute

A full-day PATRIC training session hosted by the Computation Institute, a joint initiative between The University of Chicago and Argonne National Laboratory to advance science through innovative computational approaches.

PATRIC May 2014 Release: New Easily Accessible and Manually Curated Specialty Genes Data

Including Antibiotic Resistance Genes, Drug Targets, Human Homologs, and Virulence Factors.