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Assemble and Annotate Your Genome Sequences

PATRIC now provides genome assembly and annotation services. Users can bring their sequence reads, upload them into the private workspace, assembly and annotate them, and download the fully annotated genome.

PATRIC Publications

Includes doi, PMID, and PMCID links.

PATRIC Wants to Hear From You!

The PATRIC team is committed to supporting and growing the bacterial research communities. To help us identify your specific needs, please take a moment to fill out our short PATRIC survey. Your participation is voluntary, and greatly appreciated.

PATRIC Workshop – San Diego State University

by rkenyon

AGENDA Monday, July 20, 2015 9:30am            Register for PATRIC Account 10:00am          Overview of PATRIC (www.patricbrc.org) - Tom Brettin 10:30am          Assemble a Genome in PATRIC - Bob Olson Uploading reads and read libraries Selecting assembly methods for comparison Queuing jobs and retrieving results Analyzing assembly output and comparisons http://enews.patricbrc.org/wp-content/uploads/2015/06/Genome-assembly-Workshop.pdf 11:00am          Break 11:15am          Annotate a Genome in PATRIC […]

PATRIC Workshop Agenda – University of Florida

AGENDA Monday, July 13, 2015 8:30am            Register for PATRIC Account 9:00am            Overview of PATRIC (www.patricbrc.org)  9:30am            Assemble a Genome in PATRIC                                Uploading reads and read libraries Selecting assembly methods for comparison Queuing jobs and retrieving results Analyzing assembly output […]

PATRIC Gives Three Workshops and Presentations in China Focused on Bacterial Antimicrobial Resistance

The PATRIC team gave a series of workshops in China focused on Antimicrobial Resistance (AMR) featuring new PATRIC tools and resources to aid in the identification and study of antibiotic-resistant bacteria. The workshops attracted well over a hundred researchers from top organizations and institutions in China. The first workshop was on June 25-26, 2015 at […]

PATRIC June 2015 Release Features Integrated Comparative Analysis Capabilities with User-Supplied Genomes and New Services for Protein-Based Genome Comparison, RNA-Seq Analysis, and Metabolic Modeling

The June Release delivers the second stage of genome assembly, annotation and integrated analysis in PATRIC. It also includes a new Proteome Comparison Service, RNA-Seq Analysis Service, and Metabolic Modeling Service, plus updates to the Private Workspace and other enhancements. NOTE: You must have a PATRIC user account and be logged-in to use the services […]

PATRIC Workshop at Arlington Research Center, May 2

PATRIC will host a workshop for high school and community college educators at the Virginia Tech Research Center in Arlington, VA, from 9am-5pm on Saturday, May 2, 2015. The workshop is free, but registration is required. Participants will also need to bring a laptop. To register, please visit the workshop site: http://vbi.vt.edu/resources/patric-workshop/patric-detail. Throughout the day, workshop sessions […]

PATRIC/RAST Tutorial Workshop, June 15-17, 2015

The RAST/PATRIC teams will be offering a tutorial on June 15-17 2015 at Argonne National Laboratory in the suburbs of Chicago IL. The workshop will run for three days with the third day optional and devoted solely to participants working on their own problems with help from the RAST/PATRIC team members. The tutorial will cover […]

PATRIC March 2015 Release Features Genome Assembly and Annotation Services and over 6,000 New Genomes

This March Release begins the first stage of integration of new and updated analysis services in PATRIC, including addition of a new Genome Assembly Service, Genome Annotation Service, Differential Expression Service and enhanced Workspace to facilitate use of these services. NOTE: You must have a PATRIC user account and be logged in to use the […]

Rick Stevens Presents at the Biopolis in Singapore on March 17, 2015

Rick Stevens gave a presentation entitled, “Exascale Challenges for Genomics: Machines, Algorithms and Problems for Large-Scale Biological Data” at the Biopolis in Singapore, Singapore, on March 17, 2015.

Rick Stevens Presents at the NAID Functional Genomics Meeting on March 3, 2015

Rick Stevens gave a presentation entitled, “PATRIC Overview” as part of the NIAID Functional Genomics Meeting in Seattle, WA, on March 3, 2015.