PATRIC now provides a new service that builds phylogenetic trees. The trees, which can include both private and public data, are built using well-established methods for generating whole-genome phylogenies from amino acid sequences. On November 30th at 3pm EST we will provide a webinar demonstrates this service. Please email firstname.lastname@example.org if you plan to attend […]
PATRIC has added several new services and data resources in the July 2017 Release: Phylogenetic Tree Builder constructs custom phylogenetic trees using conserved protein sequences. Tn-Seq Analysis aligns reads and measures essentiality of Tn-seq data using the TRANSIT software. Similar Genome Finder finds the closest related genomes to selected genome or FASTA file using MInHash. Compare Region Viewer displays […]
Data Updates: New Genomes and Metadata In this release, PATRIC has added >7,500 new genomes and associated metadata, bringing the total number of genomes in PATRIC to over 116,000. The full list of available microbial and host genomes can be accessed here. This release features 1,668 Klebsiella pneumoniae genomes, which are clinical isolates from Houston […]
The PATRIC/RAST teams will be offering a tutorial workshop on 2017-November 14-16, at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days, with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]
PATRIC July 2017 Release Features over 3900 New Genomes, and New Functionality and Data Including a New Phylogenetic Tree Building Service and Enhancements to Multiple Services and Tools.
PATRIC July 2017 Data and Website Release: Data Updates: New Genomes In this release, PATRIC has added 3902 new genomes and associated metadata, bringing the total number of genomes in PATRIC to over 108,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing […]
The PATRIC/RAST workshop being offered on 2017 August 14-16 is now FULL. We thank all those who have enquired for their kind interest in PATRIC and RAST. We will post information regarding the date and location of the next workshop as soon as it scheduled. The PATRIC/RAST teams will be offering a tutorial on 2017-August […]
PATRIC May 2017 Release brings total genomes to over 100,000 and includes 21 host response data sets
New Genomes In this release, PATRIC has added over 7,700 new genomes, bringing the total number of public genomes in PATRIC to 103,779 bacterial, 1,078 archeal, and 10 eukaryotic host. This is a notable milestone for the project, especially considering that the database contained only 400 bacterial genomes at the end of 2009, when PATRIC […]
PATRIC will be hosting a 1-day workshop entitled “The PATRIC Bioinformatics Resource Center for ‘Omics Data Analysis,” at the 18th International Conference on Systems Biology (ICSB 2017) on August 6, 2017 on the Virginia Tech University campus in Blacksburg, VA. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly and annotation, RNA-Seq analysis, […]
PATRIC March 2017 Release Features over 3600 New Genomes, and New Functionality and Data Including an Antibiotics Database, AMR Phenotype Information, a Close Genome Finder Service, HPI/PPI Data and Visualization, a Compare Region Viewer, an ID-Mapping Tool, and Enhanced Global Search.
PATRIC March 2017 Data and Website Release: New Genomes In this release, PATRIC has added 3669 new genomes, bringing the total number of genomes in PATRIC to nearly 98,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. UniProt ID […]
PATRIC will be hosting a 1/2-day workshop entitled “Assemble, Annotate and Analyze Your Own Genome using PATRIC, the All Bacterial Bioinformatics Resource Center,” at the Great Lakes Bioinformatics (GLBIO) Conference at the University of Illinois at Chicago on May 17, 2017 in Chicago, Illinois. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly […]