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Assemble and Annotate Your Genome Sequences

PATRIC now provides genome assembly and annotation services. Users can bring their sequence reads, upload them into the private workspace, assembly and annotate them, and download the fully annotated genome.

PATRIC Publications

Includes doi, PMID, and PMCID links.

PATRIC Wants to Hear From You!

The PATRIC team is committed to supporting and growing the bacterial research communities. To help us identify your specific needs, please take a moment to fill out our short PATRIC survey. Your participation is voluntary, and greatly appreciated.

PATRIC Workshop at ICSB 2017 at Virginia Tech, August 6, 2017

PATRIC will be hosting a 1-day workshop entitled “The PATRIC Bioinformatics Resource Center for ‘Omics Data Analysis,” at the 18th International Conference on Systems Biology (ICSB 2017) on August 6, 2017 on the Virginia Tech University campus in Blacksburg, VA. The workshop will cover PATRIC’s analysis pipelines, which include genome assembly and annotation, RNA-Seq analysis, […]

PATRIC March 2017 Release Features over 3600 New Genomes, and New Functionality and Data Including an Antibiotics Database, AMR Phenotype Information, a Close Genome Finder Service, HPI/PPI Data and Visualization, a Compare Region Viewer, an ID-Mapping Tool, and Enhanced Global Search.

PATRIC March 2017 Data and Website Release:  New Genomes In this release, PATRIC has added 3669 new genomes, bringing the total number of genomes in PATRIC to nearly 98,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. UniProt ID […]

PATRIC Workshop at GLBIO 2017 in Chicago, May 17, 2017

PATRIC will be hosting a 1/2-day workshop entitled “Assemble, Annotate and Analyze Your Own Genome using PATRIC, the All Bacterial Bioinformatics Resource Center,” at the Great Lakes Bioinformatics (GLBIO) Conference at the University of Illinois at Chicago on May 17, 2017 in Chicago, Illinois.  The workshop will cover PATRIC’s analysis pipelines, which include genome assembly […]

PATRIC January 2017 Release features 5938 new genomes and new AMR phenotype data

New Genomes In this release, PATRIC has added 5938 new genomes, bringing the total number of public genomes in PATRIC to over 94945. Total 571 of the new genomes were collected from published antimicrobial resistance studies, assembled from the reads available in SRA using PATRIC Assembly Service and then annotated using PATRIC Annotation Service.  The […]

PATRIC November Release features over 9000 New Genomes, Host Genomes and Annotations, Essential Gene Predictions, Command Line Interface, RNA-Seq Service Enhancements and Other Updates.

New Genomes In this release, PATRIC has added 9,136 new genomes, bringing the total number of genomes in PATRIC to over 89,000. Total 174 genomes, which were of low quality or obsolete, were deleted from PATRIC. In addition, names of 1,633 genomes were revised to include strain names to make them more informative. The full […]

PATRIC Workshop at GLBIO 2017 in Chicago, May 17, 2017

by patricwpadmin

PATRIC will be hosting a 1/2-day workshop entitled “Assemble, Annotate and Analyze Your Own Genome using PATRIC, the All Bacterial Bioinformatics Resource Center,” at the Great Lakes Bioinformatics (GLBIO) Conference at the University of Illinois at Chicago on May 17, 2017 in Chicago, Illinois.  The workshop will cover PATRIC’s analysis pipelines, which include genome assembly […]

PATRIC/RAST Tutorial Workshop December 12-14, 2016

by patricwpadmin

The PATRIC/RAST teams will be offering a tutorial on December 12-14, 2016 at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]

PATRIC September Release features over 4500 New Genomes, Literature Feferences, and Assembly Service Enhancements

New Genomes In this release, we have added 4653 new genomes, including replacement of 3200 Streptococcus genomes which had issues with the sequence data. This update brings the total number of genomes in PATRIC to over 79,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from […]

PATRIC/RAST Workshop, November 9-11, 2016

The next PATRIC/RAST workshop will be held Wednesday, November 9, 2016 – Friday, November 11, 2016 at Argonne National Laboratory. We will post further details once they become available.

PATRIC July 2016 Release Features Over 7600 New Genomes and AMR Panel Data for Approximately 5400 Genomes. PATRIC Also Releases Alpha Version of New Website Design.

New genomes: In this release, we have added 7,683 new genomes, bringing the total number of genomes in PATRIC to over 77,000. 5,483 of the new genomes are from published AMR studies and were assembled from the reads available in NCBI SRA database. The remaining 2200 genomes were added from NCBI GenBank.  The full list […]