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Assemble and Annotate Your Genome Sequences

PATRIC now provides genome assembly and annotation services. Users can bring their sequence reads, upload them into the private workspace, assembly and annotate them, and download the fully annotated genome.

PATRIC Publications

Includes doi, PMID, and PMCID links.

PATRIC Wants to Hear From You!

The PATRIC team is committed to supporting and growing the bacterial research communities. To help us identify your specific needs, please take a moment to fill out our short PATRIC survey. Your participation is voluntary, and greatly appreciated.

PATRIC November Release features over 9000 New Genomes, Host Genomes and Annotations, Essential Gene Predictions, Command Line Interface, RNA-Seq Service Enhancements and Other Updates.

New Genomes In this release, PATRIC has added 9,136 new genomes, bringing the total number of genomes in PATRIC to over 89,000. Total 174 genomes, which were of low quality or obsolete, were deleted from PATRIC. In addition, names of 1,633 genomes were revised to include strain names to make them more informative. The full […]

PATRIC Workshop at GLBIO 2017

by patricwpadmin

The PATRIC Bacterial Bioinformatics Resource Center provides a unique experience, where researchers can see their private data “virtually integrated” with the public genomic data available for bacteria or archaea. Private data can be run through assembly and annotation pipelines, stored in a private workspace, and then compared using the suite of analysis tools provide by […]

PATRIC/RAST Tutorial Workshop December 12-14, 2016

by patricwpadmin

The PATRIC/RAST teams will be offering a tutorial on December 12-14, 2016 at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]

PATRIC September Release features over 4500 New Genomes, Literature Feferences, and Assembly Service Enhancements

New Genomes In this release, we have added 4653 new genomes, including replacement of 3200 Streptococcus genomes which had issues with the sequence data. This update brings the total number of genomes in PATRIC to over 79,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from […]

PATRIC/RAST Workshop, November 9-11, 2016

The next PATRIC/RAST workshop will be held Wednesday, November 9, 2016 – Friday, November 11, 2016 at Argonne National Laboratory. We will post further details once they become available.

PATRIC July 2016 Release Features Over 7600 New Genomes and AMR Panel Data for Approximately 5400 Genomes. PATRIC Also Releases Alpha Version of New Website Design.

New genomes: In this release, we have added 7,683 new genomes, bringing the total number of genomes in PATRIC to over 77,000. 5,483 of the new genomes are from published AMR studies and were assembled from the reads available in NCBI SRA database. The remaining 2200 genomes were added from NCBI GenBank.  The full list […]

PATRIC May 2016 Release Features Over 700 New Genomes and AMR Panel Data for Approximately 1800 Genomes

In this release, we have added 748 new genomes from NCBI GenBank, bringing the total number of genomes in PATRIC to over 70,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing Page. This release includes a special genome, corresponding to […]

First U.S. Case of E. coli Resistant to Colistin

The assembled genome of Colistin-resistant E. coli MRSN 388634 is now available in PATRIC here. Sequence reads for MRSN388634 have been deposited in the NCBI Short Read Archive by researchers at the Walter Reed Army Institute of Research and Walter Reed National Military Medical Center under Accession number SRP075674. The authors report the presence of […]

PATRIC/RAST Tutorial Workshop, July 26-28, 2016

The PATRIC/RAST teams will be offering a tutorial on July 26-28, 2016 at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]

PATRIC / RAST Tutorial Workshop Agenda

by patricwpadmin

Dates: July 26 – 28, 2016 Location: Argonne National Laboratory, Argonne, IL Agenda: Tuesday, July 26 9am                PATRIC Introduction and registration 10am              Genome Assembly 11am              Genome Annotation and exploration 12pm              Lunch 1pm                SNP pipeline 2pm                Proteome Comparison 3pm                Questions and adjournment Wednesday, July 27 9am                Comparative Genomics 12pm              Lunch 1pm                RNA-Seq 2pm                Upload […]