Assemble and Annotate Your Genome Sequences

PATRIC now provides genome assembly and annotation services. Users can bring their sequence reads, upload them into the private workspace, assembly and annotate them, and download the fully annotated genome.

PATRIC Publications

Includes doi, PMID, and PMCID links.

PATRIC Wants to Hear From You!

The PATRIC team is committed to supporting and growing the bacterial research communities. To help us identify your specific needs, please take a moment to fill out our short PATRIC survey. Your participation is voluntary, and greatly appreciated.

Maulik Shukla Presents PATRIC at the University of Pune, India December 24, 2014

The presentation showcased PATRIC’s bacterial genome annotations, comparative genomics and transcriptomics tools, and data analysis pipelines to the faculty and graduate students at the Department of Bioinformatics at the University of Pune, India.

PATRIC December 2014 Release Features Additional Support and Data for Antimicrobial Resistance and over 5,000 New Genomes, Including Archaea

This December Release sets the stage for new functionality and data in PATRIC. In 2015, our primary goals are as follows: Revamp PATRIC infrastructure to support the hundreds of thousands of prokaryotic genomes that will become available over the next five years, providing real-time integration and release of data. Support end-to-end analysis of prokaryotic genomes […]

PATRIC October 2014 Release Features New Special Data Sets and Updated Project Information

Additional Special Data Sets In addition to incorporating large data sets from public repositories, PATRIC features Special Collections data pages that highlight data sets that were generated for users to use together to study a problem. Many of the collections have been generated by NIAID-funded projects to provide baseline data for further use by researchers. […]

PATRIC Team Delivers Workshop at the ISCB-Latin America X-Meeting

A full-day PATRIC training session hosted by the ISCB-Latin America X-Meeting with BSB and SoiBio in Belo Horizonte, Brazil.

Dr. Bruno Sobral Gives Presentation at Institut Pasteur on October 1, 2014

Dr. Sobral gave a presentation entitled, “Computational System Sciences and Advanced Information and Communication Technologies for Public Health and Policy” at Institut Pasteur on October 1, 2014.

Comparative Genomic Analysis at PATRIC, A Bioinformatic Resource Center. Book chapter in Host Bacterial Infections, Methods in Molecular Microbiology.

Click to view Abstract and link to book.

Dr. Bruno Sobral Gives Presentation at the ILSI IAFP 2014 Conference in Indianapolis, Indiana on August 4, 2014.

The presentation, entitled, “Bioinformatic analysis of whole genome sequencing data and its application in the food industry,” featured current and future capabilities of the PATRIC system for assembly, annotation, and analysis of bacterial genomes. IAFP 2014

Dr. Rebecca Wattam Presents “Microbiology in the Post-Genome Era” as part of a Research Experience for Undergrads

Click here to view presentation.

PATRIC July 2014 Release Features New Circular Genome Viewer, Group Explorer, Integration of Protein-Protein Interaction Data, and New Genomic and Transcriptomic Data

Over 6,000 new genomes, including over 1,500 Mycobacterium tuberculosis genomes from TB-ARC.